Scaffold Ga0066612_1316554

Overview

Basic Information

• Taxon OID: 3300004642
• Scaffold ID: Ga0066612_1316554
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027845	Metagenome / Metatranscriptome	193	Y
F039623	Metagenome / Metatranscriptome	163	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066612_13165541	F039623	N/A	FRKFKCLVTNQIYEVVQTECTGRYIINAIDTLVRSDGLRKSFARAELRTRFSNIEGIPEKDYLIKKKKKR*
Ga0066612_13165543	F027845	N/A	MTQAEIIELVRDIHPEVDHEGVDIVYDNGVYDVDVRFTSWDCLFTIEIYSKQGDAPLELSSRTMTELFDYVVDLHTEYMRDTIEMQETRDYLDIYEI*
Ga0066612_13165544	F103244	AGAAG	MRVEDLTSYENDKSRVTVFMETDTDGSYHFLKHVQDKKAEDGQIIRYSLEMFMAEYYLIEKFIKDNLVEDRKFFKSVMNLKASRNE*