Basic Information | |
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Taxon OID | 3300004642 Open in IMG/M |
Scaffold ID | Ga0066612_1307724 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_10m_RNA (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1613 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium TMED105 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 10 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006200 | Metagenome / Metatranscriptome | 379 | Y |
F013232 | Metagenome / Metatranscriptome | 273 | Y |
F015402 | Metagenome / Metatranscriptome | 255 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066612_13077242 | F013232 | N/A | MSDREIMNAKSGVPMWWKPGIAFLKQDWINHPHLKHFRNKKSTDSKCDCSSPKLVELWEHDSCVRGRIDTTVCVKCNEVESLSIVR* |
Ga0066612_13077244 | F006200 | N/A | MANSTEDWLEELVKKYSIPTEETKEKRGVLNETQLINLKNGKN* |
Ga0066612_13077245 | F015402 | N/A | MGRTKDFLGSLDLTEEELNAELYSRGDEDYQYAKWIESPEFMEYVNAELDSTRPRYSEHDIMSATRYASQQITIEPSEVGKEVYDMLFSEKIEEYLTCKTF* |
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