Scaffold Ga0066395_10445326

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066395_10445326

Scaffold Ga0066395_10445326

Overview

Basic Information
Taxon OID	3300004633 Open in IMG/M
Scaffold ID	Ga0066395_10445326 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	737
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002127	Metagenome / Metatranscriptome	591	Y
F029883	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_104453261	F029883	N/A	RSMSSEAAKYLRYAKQCAKAAERTTDPKVRERLLKVVADLTAAALFAASSGTTRPKPGSPSRAA*
Ga0066395_104453262	F002127	N/A	MRKVDLRKLLHRVESAPIGSPELDSEFESTFRSVPSRVTRSIDAAARLIETELPGWWWNCGHCALRNGASLYVPGSSQIRVNYPSARTGPDFGPRPEHLRLLQDPKWGKLFDGGFHCDRAGTVSLAMLAVFLEAKIALTLVQPEASANKVIRSNK*

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