Scaffold Ga0066395_10002574

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10002574
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6279
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003032	Metagenome / Metatranscriptome	512	Y
F006811	Metagenome	364	Y
F007338	Metagenome	353	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_100025745	F006811	N/A	MDRADAIRLLKALVAAGMDARAPRANAWIEKKALEIGLEGNQLVSALTYAGNEGWLADAARRNWTSLTRAGQAIAGR*
Ga0066395_100025748	F007338	GGGGG	VAEVSESNSLELRIAFHNAVSRFQAWTADVGELRVKLRGRFCPISEVCEAVSNLSHPLPRAVFAILYKETQKTDETYRGAGRRLLRLIERRKDEIRRRKTLRP*
Ga0066395_100025749	F003032	GGAGG	MDNNGRKLSDESEVPTELKLENTVDTSGMWFAAAVLFAVLAAGFIIYRAANDGIRTAADDTPRAPASNSR*