Scaffold Ga0066395_10000106

Overview

Basic Information

• Taxon OID: 3300004633
• Scaffold ID: Ga0066395_10000106
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30440
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001529	Metagenome / Metatranscriptome	677	Y
F006521	Metagenome / Metatranscriptome	371	Y
F007079	Metagenome / Metatranscriptome	358	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066395_1000010620	F006521	N/A	MAPINGQRTIARVVEIFRITAMAAYEEIKRGGTESLELNPVVVRFVWKHAAYPVGWSSRRQQLLLDDFVLVAENRWID*
Ga0066395_1000010629	F001529	N/A	MKQNGDVKMNRRDQELLDKQMARLTPPRNEGAIALMLAAMFLVGVTLGGVLSPHQSAPTQIASLD*
Ga0066395_100001064	F007079	GGAG	MDRHDVAFPDPNEIAPHTIAFGRMMFAHAAFEREVRSLVGAINPKKPGFGERAENQWTASESGTGKIIILIRHHRGSGLPQSVQIKNILNEAIDPCRDRNFLAQGTWCCFNRRTLTIEVRGGVRWGQPELPPESRAYKVSDILKLARKFKDIEAEIYKIRRSLEPKMSEAEMRAASSFLRAP*