Scaffold Ga0069718_16269567

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_16269567
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3049
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_162695675	F075991	N/A	MTNEEKKAALIAKVGEQKVNELTQNIWLLLGSLKTAKYAIAQFEPNKLKFEMKKRFLDLHTAINLFVNTFEKAANPDERELLNTTSYENVGAVAELIAMAITLPESQIEWYLDECKKLTYVAFNKSQNELRSESGE*
Ga0069718_162695676	F082207	N/A	MNCVAKAVNKMFPNQDTSEFHNRTLGVGMGDIQRMIPNDLSVWAVYCNHYKCVNFDLIRQLPKTNDYIPLFLFHSQMNDRFRLHCEFALWDRNTVVVNDIEHDADYYFKHNKVVQVAALIKFETHQILIAKK*
Ga0069718_162695678	F067450	N/A	EYYTGRIFSAYGAFISKRYLDFETKEKNRVWAKYNAWKVKRDVYLNGQLENKTAEESDVIYKDYLQQVEHVYNDTENNMKNNPWSMAGACPICFGTWVALFTFTFFVIFVPLPWWFIFIGTPAAVIVSRYIKLS*