Scaffold Ga0069718_16210360

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_16210360
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4825
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020696	Metagenome / Metatranscriptome	222	Y
F042902	Metagenome / Metatranscriptome	157	Y
F087193	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_162103603	F042902	N/A	MTLKDLIDLAGDRELSKSYPKADGLYIWDYKLQHDAANDFELQLALIPSDSGKTGFKDKVSIDELVNYVLEETDPQVSGDEVISQLQIVGVEGITIAKV*
Ga0069718_162103604	F087193	GAG	MAVQRATEFEVLRVFHTLWKSRGLETAIVKRLLKEEFNLELTVLANGEIAAQSPDGKSKYSIK*
Ga0069718_162103609	F020696	AGGA	MESKLERCHHCGEEKENCYYGFIALTIPHPDWEAKIDKWGRKDWWENLERTDLTPEQMEELDQICTYDQALSTVGRGVQCNDCGKKEAELYDRYYPRVGS*