Scaffold Ga0069718_15935680

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_15935680
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3980
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F004546	Metagenome / Metatranscriptome	433	Y
F032098	Metagenome / Metatranscriptome	181	Y
F034149	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_1593568015	F000345	GGA	MTEKQPNEFGKALQEWWDSDNFKELQKANEEAKQRAVGKYHMLSEEDKIDMVQAICYIICKAEQEGCSHRGLQSALGIYPGGFWVDHLMDVHNALWSYYHDQKQEKELKDDLDSLEEFLTTEE*
Ga0069718_159356804	F034149	AGGA	MDADEEPGFEILHLSFRKQESEAFSGVPINFYHGNIVFRLTNEDAINRVKYYMEENEKLRVAPDEDLLNSYYEDLHFVFDKSEELDEEKDGEKYTPLQILNKNGIKEEDVFIYAYRRNMMPLHDFIQYHEKFDVYQMREYFQDTPVVRGIIQYLQDMKDGKENPSRTVYHEQFLNTLENLCWWWD*
Ga0069718_159356805	F004546	N/A	MEHTEEFPFDQFPYKLVHKEGKEVRKCYFQSEEHRKQHIDRYKLKKKDIQLSYKYD*
Ga0069718_159356808	F032098	N/A	MENSDFPYHTLDPTTSWYEWICYCEICHQLGIKDQPSVQRFMRYNAYLKEIGVK*