Scaffold Ga0069718_14205704

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_14205704
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025754	Metagenome / Metatranscriptome	200	Y
F048758	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_142057041	F025754	AGG	MYFYILQGPYRLGFGITGNYERREKDYTGAWGGVAKFNYLFEGPLPHVKRLENIIKDMHKDMLWHLDEWKTEWLDNDWTAEQLRDFVLQLVQERHLHIQQVR*
Ga0069718_142057042	F048758	N/A	VKLGMLLIDEDIQRALDPKHCKKIATPGIFNPSLLQVVFCVKTPGKEEYHAVDGQHTATLLAGLVDAGLFAMETDWREVEIPVLYIETTSKAFARKAFALINGKGKKKISAYYEHRTKVMSVRIDSSDDEDDVNAERKQSICENYHCYPIDDEGPFVGKPGTFTHMQALNLPDEILELACKFHNKYFHYDSIDGSLWFMMADLYRAFKAAKIDITDEFLEELAGILQIYFAGLYQFHESVHAAHKRWGKHYYGYDEFPWSDDAIACVLVSLYEKLGGKQKIPQMLLDRFDKIVDFIDDDIKDLYRKAV*