Scaffold Ga0069718_11864428

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_11864428
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004723	Metagenome / Metatranscriptome	426	Y
F048935	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_118644282	F048935	N/A	MKTDKLNEKFKKATKAQKRVMIAQDVLAQIKTKRYIVESGCWIDTNINAACEKNLKDEDSVQELFAEKKIESCNVCALGGLFMSCTNFNNNTSFVELNDASGHLGDWISEGEEFSNKLNKIFSYKQLRSIESYFENNDGYFYNQREFDGIKAFCNAYPSEKKRLKLIMENIVENNGTFVAEKLKI*
Ga0069718_118644285	F004723	N/A	MKEGDKFIHTDILGKKWELTYTGTRREVKGCEFEFFIDDKGGGCFFTDSEVAKMEKKD*