Scaffold Ga0069718_10966784

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0069718_10966784

Scaffold Ga0069718_10966784

Overview

Basic Information
Taxon OID	3300004481 Open in IMG/M
Scaffold ID	Ga0069718_10966784 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	The National High-throughput DNA Sequencing Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1654
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location Name	Copenhagen, Denmark
Coordinates	Lat. (^o)	55.685937	Long. (^o)	12.574205	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_109667842	F033013	N/A	MAITLTTKANTKTVMLQIAPDLYARIKVQAKRHNIPASAAMREILEQAINELEASIS*
Ga0069718_109667844	F038240	GAG	MATPAGKKMRVQVLLDPDALEMMEREVAQRYNSMHRVSISSLANEIIKSHYAILESTDV*

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