Scaffold Ga0069718_10130672

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10130672
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7663
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025975	Metagenome / Metatranscriptome	199	Y
F048255	Metagenome / Metatranscriptome	148	Y
F090296	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_101306721	F048255	GGAG	MAKTITIELADDGTIIVTSDEMTEPYVCQSADECVQFIGKMLAEETGEGPEEQATEGAENYGQMWNEEAASRKPQPGLMA*
Ga0069718_101306722	F025975	AGGAG	MEQNYGNPASRNTMRAAGSMLKSGAAIGGGGNQTQGKGEIPGKVSVPMPGTNTTQPAYKGGTAKAPTGFNNGLINGMI*
Ga0069718_101306724	F090296	N/A	MDDLAFPTGAKTGRTHAKQITSQKKGRDMRINLKAVAEACIEEGLDPAVEIAKALKATIPMMRNGMQVFDDNGVAVMVPLLDVDTRMRTLNEFLQYTQPKLKSVEVKMSGSLDLTSEQLDNRLNMLLAKAAR*