Scaffold Ga0069718_10029051

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10029051
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5682
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F017824	Metagenome	238	N
F022403	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_100290514	F003805	N/A	MNPLEHSTESSFHKAATDTWLVERFNKGDYRGLLEAALLLNTLHQLERTKSAWAIREAANNLADCFGLDRDSA*
Ga0069718_100290516	F017824	GGA	MNVLSWEENREVRFGEGISRTSAEKSALFELQIWLPGQGAMRDLVRAESLQQAVEFAKNRYPNCRVDTPVPPARKPKLARSHTSPSVAAKARKKLSETCNDN*
Ga0069718_100290517	F022403	AGGAG	MPLRHGSKIYCQLLLDTNRYKLAEKLAATEGKKVTGLLREMVYAALEKALPASDYKAAEAADKAAWAESVQRRVQGRLRSKQPEGGSEIDA*
Ga0069718_100290518	F004722	GAG	MSRTGREIVLEWLMREVRTAKTADLHRAAAFLEWARGIRKGCGKQRSSARVAQSNAWRKGVDQDLRW*