Basic Information | |
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Taxon OID | 3300004481 Open in IMG/M |
Scaffold ID | Ga0069718_10029051 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0112041, Gp0112042, Gp0112043 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The National High-throughput DNA Sequencing Centre |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5682 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark |
Source Dataset Sampling Location | ||||||||
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Location Name | Copenhagen, Denmark | |||||||
Coordinates | Lat. (o) | 55.685937 | Long. (o) | 12.574205 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003805 | Metagenome / Metatranscriptome | 467 | Y |
F004722 | Metagenome | 426 | Y |
F017824 | Metagenome | 238 | N |
F022403 | Metagenome / Metatranscriptome | 214 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0069718_100290514 | F003805 | N/A | MNPLEHSTESSFHKAATDTWLVERFNKGDYRGLLEAALLLNTLHQLERTKSAWAIREAANNLADCFGLDRDSA* |
Ga0069718_100290516 | F017824 | GGA | MNVLSWEENREVRFGEGISRTSAEKSALFELQIWLPGQGAMRDLVRAESLQQAVEFAKNRYPNCRVDTPVPPARKPKLARSHTSPSVAAKARKKLSETCNDN* |
Ga0069718_100290517 | F022403 | AGGAG | MPLRHGSKIYCQLLLDTNRYKLAEKLAATEGKKVTGLLREMVYAALEKALPASDYKAAEAADKAAWAESVQRRVQGRLRSKQPEGGSEIDA* |
Ga0069718_100290518 | F004722 | GAG | MSRTGREIVLEWLMREVRTAKTADLHRAAAFLEWARGIRKGCGKQRSSARVAQSNAWRKGVDQDLRW* |
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