Scaffold Ga0068919_1250520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068919_1250520

Scaffold Ga0068919_1250520

Overview

Basic Information
Taxon OID	3300004473 Open in IMG/M
Scaffold ID	Ga0068919_1250520 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1147
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_54_36	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005640	Metagenome / Metatranscriptome	394	Y
F045405	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068919_12505201	F005640	AGGAG	MAAPGTEKYEHAETEKALETLTKWGKNPNIDGGENIGFSVSRQGAPSDAFMGMGDCTPFTPSGHRGTLHGQPVGDTGVPVAYFDNFGGAVPTINQVPFTFAFDLNSGKVSMNGAFPGLPANLEFRVEYLKEFDGAGGKNIVFTSDKTSDHAGYVLAVQLVGAS*
Ga0068919_12505202	F045405	AGGAG	MARLGIGVIARYGNWYHGDDDFFTHCLILKNGECWLLGQGLEQVILRVFKARHSKFKQLKTALASIPAGWATASYSGYNFITDAESATASEIAVYGKKTGGALAGYFVPPAGSVVEGLVKAIAHID*

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