Scaffold Ga0063356_100611249

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100611249
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1476
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1006112494	F051769	GGA	MNAYAASGRIAGVVAFAVGAVALGLLLRGGRRSDPLPVSRCPIHGIAYDAELEVCPDCAKTDAAGGKGGAR*
Ga0063356_1006112495	F095084	GGAGG	MSGMPALYCRTCNTFREIEDWREGGEALVIALEPCGHEIRRRAGIEWPTHKAAA*
Ga0063356_1006112496	F013143	AGGAG	MLSRFVLGAIVGGIAVYMWGDEIRRFADTKSRTARLAAADTLKAVQSTAEDMFDSAKDQVTSTLQSGQDAIRPARASRER*