Scaffold Ga0066223_1196091

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1196091
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1227
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11960913	F087206	AGG	MSNIYNEQELEDIQSYVLEQDRKGLLEDEISYISFANNLHPDDDRDEILEFITESILYEKNVGGLV*
Ga0066223_11960914	F035770	N/A	MKPYKTITFGMAEFAYARHLRDELGHTGEIIYPNKDASKQDRDGVWLLLTITGERLGTVSPDGTVRTT*