NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1182487

Scaffold Ga0066223_1182487


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1182487 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053062Metagenome / Metatranscriptome141Y
F069775Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0066223_11824871F053062AGCAGMVDFLKWIATLITLAGALATALALDPLNIYLLNAGAVLFLIWGILIKEKAMIAVNAGLLG
Ga0066223_11824872F069775AGGAMSYASLSVEELQSYFSDFHKDYYGFRPRGFGTPEQWNDRDWLIANIESIHGSIESMKATFKGREELREQGWAVEETDPELANRAKWLADERKREQDDFMAKMDADWAEQMEKADLNG*

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