Scaffold Ga0066223_1175080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066223_1175080

Scaffold Ga0066223_1175080

Overview

Basic Information
Taxon OID	3300004461 Open in IMG/M
Scaffold ID	Ga0066223_1175080 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	919
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030882	Metagenome	184	N
F086163	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11750801	F030882	AGG	MDFKGLVDHYQTLPKSELIEKLVFKNARLLNQDNVIEKLEDEIKRIEEVDLGHQKLNGELSEKISQLQKQKEILQKA
Ga0066223_11750802	F086163	N/A	VDLIGETHFGDIKNVFGTLVKTKAGYSYTKKKTPLVPYHSDCLQIALYQKLLPNLKPFLTYASCSDKRIFTPENCTELRPESLEHYYDELVLYQRCWEKKLEFADGNIETLALLSKPDFSELRKNSFWWKGTDPAVIKRFKGYYGF*

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