Scaffold Ga0066223_1154813

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1154813
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 948
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F096866	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11548131	F096866	N/A	TPPVEWSVGETVAQIGEVVDVSFNCSHGLMVKKEGLSKSNNKPYAGYVCSASKGEQCAPKWAKLTAAGTWYWPDDSEPGKGGE*
Ga0066223_11548132	F007469	AGGAGG	MGYLEIPDGSGLKATFNDDGVSVVPTGLAEKCDACNEDRLLHEGDLLRCYSCHSINRIP*
Ga0066223_11548133	F002162	N/A	MPNYEYACDREGSSIVLDLPMQHEIPLCQVCGFELTRVYTAVPAIFKGSGWAGKSG*