NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1141946

Scaffold Ga0066223_1141946


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1141946 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2969
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103047Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0066223_11419467F103047N/AMKKLIFLLFPLLCISQDLKLDHSYINSSDFQVGDTITIKFNTIQVTEAANPNLYMFDYEYNNKLLQKLEHRWKVTDNESNTNAQVSLNHWDGYKFNVDENYNENDLSSQYTYGWEGAGANSYPISSDWSVERITIQDGVGITYNNTLIEIDFIIKDKINTDYSDYNNVTHLNWMRAEDNSTSTLYDVEAMQQEIDLSSVEGGDAGSVTINLNTENDKPTHYTYDISQSGTSVASGYFDANSQAIVTGLENDVEYSIDIKVDDELAADWLDDVSTVTDVFLVFKEAIKAGSSPGGTTNTFTHGIQFLLGEVNNSGNVDFDDS
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