Scaffold Ga0066223_1042634

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1042634
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5391
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042906	Metagenome / Metatranscriptome	157	Y
F052547	Metagenome / Metatranscriptome	142	N
F073533	Metagenome / Metatranscriptome	120	N
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10426343	F052547	GAGG	MGIVTNNKRAAQADKDFDLSFNEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSFDRLNNAIDLFNNNGYRVSTINIGPTDIFGNNNIIELLKDETFRDCLSKVSTIQMVTTLTNISQEVIELLNSIPKIDGFMYDVNIALQPPVDWNWIEERLDLLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSELVEDRFDSILTLNPSFFRAPKSKVQKHLIEKWKGYDFSDDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFQVKDENDIESWTEAKSFQFMEQLTYSSETNNCGSCPNMMTCIDKGVLSYMEHHSLVSCVFPGVVTTNKS*
Ga0066223_10426344	F080057	AGGA	MLNNEWKDYVNGGRGEEFVSIDIMGQYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSIALFHQLAYELKDRTDVVLDDIVIGPTDFYGAENLDDIINNPRLADAILMMPKDNRNIQHNCSILGSLSEKDIESKIKSIEDSPLGKVVEAWDVQIALDLNRLMTDKSYVAALDERIETFKNSSLDFEISMATNIVQGVEGILYAAIDYVRDRYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLTRLAADPHRFKNKFHFLQGDVSHKAFHYSVISLHQGNMYMSPFIYENAQLHTNDFVVLKENSLVDSILNKKQEIVNSQIEKSVDKECGSCKYLNICANRMVPMIMDTVFDGRKECILNKDVIGLYDDEVYHGNSY*
Ga0066223_10426345	F042906	AGGA	MPLIKNNLYYEMTTETQTKPVSAVKIQMDVLDGCHHKCPGCFVHRRGNSSDVNQLKQAIDFIRNITDQGILVDEMLIGPTDFLASENFYEVMPDLLEIINENNPILAFVSTLIDGDLPRFCKFITDNVDINTEIEIGIATNPSKFFTKEYSDHIRNALMFIDQNLEHEVTYTFVVNIKDYGIDYEKLHDHAVKEFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYDDMFRVDSFNDVNAMVEKQIERAKGTECEDCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNINNYNGPAQTMYEWDGYSVENDKQGYRKKFLVTKDDDPELKRLKDISYVK*
Ga0066223_10426346	F073533	N/A	EITVGPTDIFDAENFNEIMNHPYMEKLYGISAVGFTTTLTQPYVEVKNKLAKIWSLYKNIHRVPDIDFKIVLDINKYLDGDNDHFYKNLELFKYGSVQFRVNYHKDVFKRIGYNDLCQRVFDDFNAPVIITPSFLTDRNARGKVDQHLANFRREMVEQKIDDKWLNLYTFFDAKFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLNSCVALKEYMYASN*