Scaffold Ga0066223_1035155

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066223_1035155

Scaffold Ga0066223_1035155

Overview

Basic Information
Taxon OID	3300004461 Open in IMG/M
Scaffold ID	Ga0066223_1035155 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	806
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043623	Metagenome	156	N
F054920	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10351551	F043623	AGG	MFKRIKKTEDDPSLKEAQTFVKGWVERVVLSTGTLLVDEEATFKKGIKKNKAASFLSTKDGYPEILGPAIFIP
Ga0066223_10351552	F054920	N/A	MADTGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMETNSGHTKMFHKENGKWQQL*

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