Scaffold Ga0066222_1033732

Overview

Basic Information

• Taxon OID: 3300004460
• Scaffold ID: Ga0066222_1033732
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2070
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046313	Metagenome / Metatranscriptome	151	N
F075871	Metagenome / Metatranscriptome	118	Y
F086365	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10337323	F086365	N/A	MKFTKNELNLIRYAVEDLVINRDKDDVPPKFEEHVNEIMHKIDWMLC*
Ga0066222_10337327	F046313	GGA	MLYTMKTKDKLYDLRQTIDDLVAIGPDYAHFMNAQIAHKNLKKIKNLLEYIG*
Ga0066222_10337328	F075871	N/A	MINKLVQEIADRCIEEIDEHIDNTIHWQLNFDDDDGDELTGELEHKIKQQILFT