Scaffold Ga0066224_1070959

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1070959
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F079342	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10709591	F079342	AGGAG	MSNIQAMSLDNARKQMARARKELELARINDTHYRGVEYTPVSGTHETHGTFVYRGRTYTK
Ga0066224_10709593	F039871	AGTAGG	VRIDLRKFFEAYEGSPHQLAAIDQLADSIPDELLDKFSDWVVCFEVDGEVQPLIEYSAKGYRMKEPWMYT*
Ga0066224_10709594	F049292	N/A	MEFLIAPVVALLVSVGYTRQQHTKHQKEYEALVTKVELLENRNEQVDKEMLKKIMTTVMPIAKAVNKLNQEVGL*