NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1028790

Scaffold Ga0066224_1028790


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1028790 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6394
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054888Metagenome / Metatranscriptome139N
F087135Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0066224_10287902F054888AGGAGMDFLEENSSEGNGSNTYLKFLAKEKAWYVGVNIFDMDYILLDPDSIKTGLGRYSGGYEFEFSDIPFSKVETKEGWKKAFSVWAMTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQMPCFRYLGSRGVKFDSGFGSEVPEFEFAGWKPRPEGFVIPAWANDEDDAKPVADSPVAKTVVTDDDIPF*
Ga0066224_10287905F087135N/AMTQYASEVALQALKNDIYAWAQKVKSHYMQTSYGDGFYEITYNDDSRELMYNDGSVKRTESPHDFEQLVRLYEQDHGEQW*
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