Scaffold Ga0066224_1008988

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066224_1008988

Scaffold Ga0066224_1008988

Overview

Basic Information
Taxon OID	3300004457 Open in IMG/M
Scaffold ID	Ga0066224_1008988 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada MC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2352
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, CA
Coordinates	Lat. (^o)	47.65117	Long. (^o)	-52.695961	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10089885	F012624	AGGAGG	MNNYKGNSAHLKALKLARIEQHIADGVVWLSLSLGVVALFTFLNWAMLARYGV*
Ga0066224_10089886	F015934	GGAG	MRQTKELIFSGEHPRLITGASYSIYAVSLITGMSNATLYRRLQGKDDITDWDITPASERNPARYGKQARERSQFNK

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