Scaffold Ga0065861_1136839

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1136839
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 659
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_11368391	F011281	GAGG	MSEFKQKVLTAAVDRYVLTPTQCMMLRQDAEVIGMKRATVMKKDGTTRRSFARSCSSCWVPMATHYKWLYSIVNELTMAVNAEHYRFDITGVQQLQILKYNPLQ
Ga0065861_11368392	F020665	AGGAGG	MKKKTRDIKLVKVQEFKAAKIVVEVEDELFEAMAQAGRKHIAKDKVACFSYALNKALLELCEEVK*
Ga0065861_11368393	F022371	N/A	RMTMLCLLELKDIVWVISWFILYSWIFLSIIYCAGYIILKLIDFIKEELEL*