Scaffold Ga0065861_1094082

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1094082
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5601
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F033806	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_109408211	F015731	AGGGGG	MSVEIEKGVIDFDVNTAAWLEQYKSALFKIKELQEVAEIARAHIEQALGDGEVGMFLNRPVVRWTRVESKRFDTKRAREILPEQVISALEVLSVSRRFTLVSEDD*
Ga0065861_10940822	F020909	GAGG	MSLTKRGKQVRAVAIVIGVWALWMIASNLWWVGVGNANADFLGWCWGSMTECVVL*
Ga0065861_10940827	F033806	AGG	MNFKKQPRQPLFSIHNHSDGSIALYLEEQDAVKDLVQDVVGAYPLDDLDLLRHSADRSVKSENYFEHLDNARENLSENAPLLCNMTEDEALILAEDLIRAVKFGRISREAGNNYPALKVVE*