Scaffold Ga0065861_1083511

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1083511
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021754	Metagenome / Metatranscriptome	217	Y
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F057311	Metagenome / Metatranscriptome	136	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10835112	F021754	N/A	METKDYKDFAVQKKILMEYLQVMIANEDWHGVADLAMDMRELEAKNKAE*
Ga0065861_10835113	F024533	N/A	MPILKTCPRCGVQHQKRGPYCSRSCGNVREHTEEDKAIRAQKLVEYHQTPEGSATREKSSRIMSAKRKGEEWEEVGQEDFAVDIPDVHDYISDYDDTWNRAEKW*
Ga0065861_10835115	F057311	GAG	MTQRKLSKQKNLKLEIESKSRFYQPVSRNGWWIKFSTYRDHYILLMIVSRYTAQTIIRYYLDEDEAVAFINFVTTCNPNDLIESA*
Ga0065861_10835116	F023321	AGGA	MFLNQPQFPVFYTFNDITRKAEDAAVKTIDFNKQLMDITIAHFDSITDNQFTTYTKKVATLNENVANDAKKIIKTEKSETGNRK*
Ga0065861_10835117	F081259	AGGAGG	MLKKLIQWFVQPQITEIEQYISAHNPKNTADVEMLINEFNYKRKLQCF*