Basic Information | |
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Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1083511 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2376 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021754 | Metagenome / Metatranscriptome | 217 | Y |
F023321 | Metagenome / Metatranscriptome | 210 | Y |
F024533 | Metagenome | 205 | Y |
F057311 | Metagenome / Metatranscriptome | 136 | Y |
F081259 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0065861_10835112 | F021754 | N/A | METKDYKDFAVQKKILMEYLQVMIANEDWHGVADLAMDMRELEAKNKAE* |
Ga0065861_10835113 | F024533 | N/A | MPILKTCPRCGVQHQKRGPYCSRSCGNVREHTEEDKAIRAQKLVEYHQTPEGSATREKSSRIMSAKRKGEEWEEVGQEDFAVDIPDVHDYISDYDDTWNRAEKW* |
Ga0065861_10835115 | F057311 | GAG | MTQRKLSKQKNLKLEIESKSRFYQPVSRNGWWIKFSTYRDHYILLMIVSRYTAQTIIRYYLDEDEAVAFINFVTTCNPNDLIESA* |
Ga0065861_10835116 | F023321 | AGGA | MFLNQPQFPVFYTFNDITRKAEDAAVKTIDFNKQLMDITIAHFDSITDNQFTTYTKKVATLNENVANDAKKIIKTEKSETGNRK* |
Ga0065861_10835117 | F081259 | AGGAGG | MLKKLIQWFVQPQITEIEQYISAHNPKNTADVEMLINEFNYKRKLQCF* |
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