NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1042719

Scaffold Ga0065861_1042719


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1042719 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F019731Metagenome / Metatranscriptome228Y
F033113Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10427191F033113AGGAGMDNSKKYQRQIVIFIEGIDGIKRHEFVHGTLYLKLEEDRDCDFIHTEIRKFYKGYVDPKGGVNMYAVGDEFAFDFVPEDREAPAFADEEKGVWSEFAE
Ga0065861_10427193F000302GGAGGMTAQTMASDTKERIRELEGQKVILKDRLEHLGYAGNLVKMHELENEVYEIEDTIRKLIK*
Ga0065861_10427194F019731N/ANILSNIDLEEQKMETEEKDWYCGICEHGPMMDNDTNCTRCGEKHSANHHVEEMTGWEDEDIEAEVEEIF*
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