Scaffold Ga0065861_1040299

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1040299
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8491
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018702	Metagenome / Metatranscriptome	233	Y
F048271	Metagenome	148	Y
F105043	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_104029914	F105043	N/A	MRDEMESRLRALWKAGWSLSIIGKSIKPERPKTTVHFWVKRAEDMKQFRDVPIPPPKSLTTSVPTKNAPRLRSISPGVPADIRPRLRELSALSKRYRAKTSPDSPLAKANRELTEIAIDLRKRGVPTAAIAEAAGVTYRAMARRLSNY*
Ga0065861_10402995	F018702	AGG	LQNAGRSCIIYLLAKGAKESREKMKTEAKFIRRRIAVGLIALALIAWAFDATTPKQCKVPTEQMNQFCLDLLYQ*
Ga0065861_10402998	F048271	AGAAGG	VKVAHISEEAVRLYEGGLSLEAVAKELGVAYRTARKAIYGAGVVARDPSARLVGRTRPEKRES*