Scaffold Ga0065861_1018711

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1018711
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7487
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10187111	F005243	N/A	MADVKNLDPNLQDKEPQLSKEQLAERREEITQFYKDNIPHLTVQAEYEDLLATIDKARAERLQAQMFIAQAAAAQKDNAGEASEEDKAFKKAMEKAAAIVE*
Ga0065861_10187113	F004866	GAG	MAIVKKVDLKLKVNIDESIKYQTLTYCFFNDILVTNSDLKFLCELSKTPNIELTKFCVQLVSMNIFKSPQSARNAITKAEKKGLLSKSGNNKKTITINSNINIQTSGLVLLDYKILGNASQVT*
Ga0065861_10187114	F006666	N/A	MRPKSHKEFRENIAEDVEVHPQVVEDFITFYYAKLRRKLSDLSYPRVYVEGLGTFELRKAKLDKAIKKNKSLLGNIAKRTYNGYAKSEDIKINIKQMDAAMEQIHNDLLDKQKFKQNG*