Scaffold Ga0065861_1013939

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1013939
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3988
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033051	Metagenome / Metatranscriptome	178	Y
F038239	Metagenome / Metatranscriptome	166	Y
F049629	Metagenome / Metatranscriptome	146	N
F073555	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10139392	F049629	N/A	MKDLVDFKNAQITALQDSNAQKEARIAILETWIFELTDDKCPRDYKQVIRTELLKTN*
Ga0065861_10139394	F038239	N/A	MGGGYRYKKNFSDFTTAYTDTYTKEMDEEGLKILKWSMFDSPDSLGSGKRFMESEPVFILDTVFRKERLKGYIHLGYTSKAYADRIGLGLESEHRIGKAIKFKCINPAHRFRFVRGLIQYGVERIKLYDDSIYFDTEHNLKGEDLSFRHF*
Ga0065861_10139396	F073555	N/A	MDVLMFVFHTVIMFSGATVPLEVVKYPKTLMLINRLALIALIIYLML*
Ga0065861_10139398	F033051	N/A	MKLALLKILEIILPQFIKSIFRKKQKKRLIIELENHDIFSTLVRVRNEVANLKFYTHGEYDKVKTRMCYDFTKHKSIKCSAKMLEIVRTKDVDIMDRDKLKKLILLEQGDMHREYIKAIRIEWDLKGVNPQDVDYVIHLFEKFRYDVIVSFEHRINSIFGSTYNKDNFALMLAVLEMWAMGIDLLPRDMQTTFESLNGKFKDIKYLS*