Scaffold Ga0065861_1010724

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1010724
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4930
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019558	Metagenome / Metatranscriptome	229	Y
F042312	Metagenome / Metatranscriptome	158	Y
F046082	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10107244	F042312	GGAG	MFVIFATKSLNDGTKGFRFNILGTKGLVRKRRTKSRGFKLFQRDKCMTSHHVGKVSLYVERNNSAARKLAHFAG*
Ga0065861_10107246	F019558	GAG	VAVMAYDVTLEIDGVTSIVSLDDTYPAVDGWATATEFAVHMAMHDHPDAAIEFIDCAEYVHEEYTQYGFIHDTPVVLQ*
Ga0065861_10107247	F046082	AGGAG	MGANIKLTKRMLDKSEINANKTVQQFLSDDFGLEYTDPFFSEGSKLTVIAEYKDGEEANVNFFRRSGRGDKMVSIQKLKTYADAGDEVHLSSDSESDGDGTHIYIQVHRPTETSDD*