Scaffold Ga0065861_1003040

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1003040
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 740
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009561	Metagenome / Metatranscriptome	316	N
F087245	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_10030402	F087245	AGGAGG	MNEGMENLKEQENMNDSLFELNTLILDLRSKLSKSLQEVLKLRKDLDLEKEEHQLTQLKYESMKNNLDKLMTDKLNSARGAVEEMQK*
Ga0065861_10030403	F009561	AGGAG	MTELKDEHLEVISKNKSRKYEIDNLVNQLSDAKESVAVLGNAIECGFLHDKHSLILQEWIVEYEQLSEQLDTHLTEV