Basic Information | |
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Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1000904 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 30782 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (10.20%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003127 | Metagenome / Metatranscriptome | 506 | Y |
F004474 | Metagenome / Metatranscriptome | 436 | Y |
F030021 | Metagenome / Metatranscriptome | 186 | Y |
F053267 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065861_100090436 | F030021 | N/A | MKTIYAILITFALISCSSERKAQYHVKKALKHGAKFIQDTDTIRITTLDSFPVIRFDSIVWEKFITTKDTVINFRNVYVPKTRFQTRIEYKERVKIERIKGKTITKNHEVVKYRINWWLLLLSFFLGIFSPKLIKLVLTKQF* |
Ga0065861_100090441 | F004474 | N/A | MNYLLSVENLKKLGLIHQNTDTKILAVAIRRSQDIHVQPALGTPLYKALLLRVQNNTWTPTYLTLMNDYVVPCLVAYVDYRCALLLNEKLTNKSVGRVNDENIQANNTPDTYVLRDQLLKDAQFYKERLIGFLMDDNGDNYPEYIDCCGSPSMCHEKVTKDNTGYSPLNWIV* |
Ga0065861_100090444 | F003127 | N/A | MSCLMTTGYNDRTCTNGKGGIKSVLLFPLGATSNAVVSGANELTSLTVTGETFLYKLKSNLSSFTAPVRVDKNNGTLWYEHELSMILASDSKELRAEIHLLAQNECVCLVENADGTIVALGLGEGLQVADANEYTSGVMKSDRKGHVIVMRGMENDEVPDVNATLYTTLLAQQSPVI* |
Ga0065861_10009047 | F053267 | GGA | MANKHRNIDKDELLEMAYRYCDFCISSTKEIATNSGVKQVKERHIPTVSYFLLHWLRREHFDFYSRTNWYDAMKDESHPLSYTIKTIDNDFNALARDIVANEGKGIFYAKNKLGMHDRQQVETRTVDKFDFDVND* |
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