Scaffold Ga0065861_1000874

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1000874
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21399
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (65.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003150	Metagenome / Metatranscriptome	504	Y
F004517	Metagenome / Metatranscriptome	434	Y
F011648	Metagenome / Metatranscriptome	288	Y
F040482	Metagenome / Metatranscriptome	161	N
F053781	Metagenome	140	Y
F065407	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100087418	F011648	AGGAG	MSEQDQDFHSFQQHLERIFKDLDDGVFLTADEIGDLRYACGLPSPIRNTHVNPVLRDVINDFNKAFGTQHSTFWRKK*
Ga0065861_100087422	F040482	N/A	MTWNLRLVNMSNPYEDYFEIREVYYDNMGKPIAHSQASIGGEDRLEVDRYIELAKLALDKPIIKFADAEKSEISKDEE*
Ga0065861_100087427	F053781	GGA	MLKLTEEFLILKLLCKMYDDALNRKDYTQMLEISVDIAESAEKLEQMTVDHINGH*
Ga0065861_100087431	F065407	AGGAG	MFTFDEQIKKYEEVLDRTKQMYEFWYNCVLSTMKDFYKFGK*
Ga0065861_100087438	F004517	AGGA	MQHMNHKYPKGNALLREHKQSTLEKNQQQRLDRRKLIANKLKDLDKEVK*
Ga0065861_10008749	F003150	N/A	MSDPFGITNGVKQVTSSINESVKASQELSKAIEGVLEVADKAAKDRAISRKKARQVNPDTTTIIEAVDEWQRLLIARQSETKIQEQITKKYGSHAWDEIQGIKARKQWEERQDKYLEQHDRRVMKSVMLLCYIFSAWIAYELTWGMWK*