NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1000041

Scaffold Ga0065861_1000041


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1000041 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36392
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (19.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013478Metagenome / Metatranscriptome271Y
F073501Metagenome120Y
F076625Metagenome118N
F096244Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_100004111F013478N/AMQDLKIAFTNIFALGLSVSEANPILQTVSLILAIGYTLISIYKKLKK*
Ga0065861_100004121F076625AGGGGGMLPLFYYPIMIERQVRILSDYISKQNNATWREKQAFNDLINHCEMLDNNYKDKTLYLERLASWYIDHIFELNQDHIKEISWEFFKHILLDKLSIVLNTPSQYNYNSLENNILGLDIQNGNKLKPYGSVSRASELLIKDIIVNNTKDKYEPIKDRL*
Ga0065861_100004124F096244N/AMNIQFEMIRGFLLGIDYLEDIKQEDVHGVITFDLLRISLGIVFIHIMVNARDSQ*
Ga0065861_100004134F073501N/AMAKKVAVDYSVVNQEAAKWCMDRGYKIYPTPIEFKNLNERTKKGIKFKLVVEFGGAKKVGTKLYEDVEWSNAIWSVYSYLYNKHGRNG*

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