Basic Information | |
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Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1000041 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36392 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (19.30%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013478 | Metagenome / Metatranscriptome | 271 | Y |
F073501 | Metagenome | 120 | Y |
F076625 | Metagenome | 118 | N |
F096244 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065861_100004111 | F013478 | N/A | MQDLKIAFTNIFALGLSVSEANPILQTVSLILAIGYTLISIYKKLKK* |
Ga0065861_100004121 | F076625 | AGGGGG | MLPLFYYPIMIERQVRILSDYISKQNNATWREKQAFNDLINHCEMLDNNYKDKTLYLERLASWYIDHIFELNQDHIKEISWEFFKHILLDKLSIVLNTPSQYNYNSLENNILGLDIQNGNKLKPYGSVSRASELLIKDIIVNNTKDKYEPIKDRL* |
Ga0065861_100004124 | F096244 | N/A | MNIQFEMIRGFLLGIDYLEDIKQEDVHGVITFDLLRISLGIVFIHIMVNARDSQ* |
Ga0065861_100004134 | F073501 | N/A | MAKKVAVDYSVVNQEAAKWCMDRGYKIYPTPIEFKNLNERTKKGIKFKLVVEFGGAKKVGTKLYEDVEWSNAIWSVYSYLYNKHGRNG* |
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