Scaffold Ga0065726_16534

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_16534
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12623
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028831	Metagenome / Metatranscriptome	190	Y
F061370	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1653410	F061370	GAGG	MTTYKEDYSKMTDAEIVMTYNAVMANAYPGDECALEDEMEKRNLDADYLEEQKLWHNG*
Ga0065726_1653411	F028831	GAGG	MKYTQAQIQAGIKFLQNKNVCFEYDAGDDDYDATARISIDVGGNRIWTDGTSIWNNKVVKGVKVENIGLTVTKYEDEDEDCGYYWSGGLAGTISYDGSGKDGTWYDGSDDDNNTLINKIKDEQDSDGMIYSDDGFIANSIKYMEEHCDFDSSLLSDFLDFDYSEQGMQDDGVVNLDVDMDANFWKKCSDELVQFVNTKQQEVA*