Scaffold Ga0065726_16073

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_16073
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13282
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F019751	Metagenome / Metatranscriptome	228	N
F037175	Metagenome / Metatranscriptome	168	Y
F049294	Metagenome / Metatranscriptome	147	Y
F050004	Metagenome / Metatranscriptome	146	Y
F065664	Metagenome / Metatranscriptome	127	N
F083376	Metagenome / Metatranscriptome	113	N
F090244	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1607312	F083376	GAGG	MIRIYTDKQTDNVIEAVDLGRVSLGETVKYTMYMKNTDIQWPVHNIRVQNVNPELRFEIPEILKANEVKEIFVYWTPKLDSREPLLTKFEFLGDLFIG*
Ga0065726_1607314	F050004	N/A	MDQNVWSQRDFTDSATYDLSGTVYDDNRLTTTRDISSFTPTFRIIDQHGELIFSTQQNITVNSNGTFLVQFSEGLSPVVQGTYQVRLRLEVSGTRLTCVGVNGSDQIYFEYD*
Ga0065726_1607317	F019751	GAGG	MTRGPDLSKEFHDYISTQWMFFSRNAYQISEQINKDTELMSKFGKVTPAGVHYHVKQIQQEMENSISEDALDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDNMDKELYLKFARTRHEIKLDSFRMLQDSALPLQVKKLKLERAKLRPARPMPQVEDNGVSE*
Ga0065726_1607318	F011190	AGG	MKLFEGFINGLKKSFSGKDYLREINKCNKCAKPSFFHTCLKCEMDEAYRGWK*
Ga0065726_1607319	F065664	N/A	MAGVAEIMCKYGAGDKVLQLEQFDIMGFNEYYGVTEMFADLQSLIKRALQIHTSYDKIVIHDYSEFKENFPKDKVILVFHGSKLRSLSGSELESVKRYRCFVTTSDLFDILPFAKHLPAPYDKELFKKDVEGHGWITINRSYQKDFIENKIKQTYPDTYYYERTVLNIIKYEDMPDFLSQYKDYVDWKFTTDTIPQSLPDPSCTGIQALALGLTVHDRNGCTLSPHLLLIHDPKLVVDRFINEII*
Ga0065726_160737	F037175	N/A	MLNFHTKNINEQFVTQIIFHTLANLKVKSLTDWLNKWDVHIWDLKSTNPEFFLHVPTTSGQKINHNMPSGVTGKYRIDLWLHDSNNEFKQRENSDRIMHEVCHTILFGTPHFVSGVHDNVNKRFSVNLHYWERFKYKKFVLSIIDIRQYL*
Ga0065726_160738	F049294	GAG	MAGNLRYYALGAYAGLIALWTVTGKLVMDESAVIALLAPIAIVIGADYIKHRNDVTE*
Ga0065726_160739	F090244	AGG	MDVEARIFEKLDKIEDRINDLCVRLSSMESEYNAHIEEMQRQQNSKLKRRDYTLAIMAISLTIIELCRSLGIL*