Scaffold Ga0065726_15148

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_15148
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15048
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003155	Metagenome / Metatranscriptome	504	Y
F014153	Metagenome / Metatranscriptome	265	Y
F024805	Metagenome / Metatranscriptome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1514817	F014153	AGGA	MFYTKEMIHKEFKMATQKDERNAMKKSYKHRIEYLKALKEDMIEAPKNFSNLNLTTDHLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAQEELEYFDLTKGEKVYKKKEQVDTIQ*
Ga0065726_1514819	F024805	GAG	MMITILVLMTTIMAKANPVTNWIENEKNKIVEYQKSSWEEGKEQNAANWAKIKSFFSNLTGQGDASQN*
Ga0065726_1514824	F003155	GGAGG	MIKNIIIISLVVIIVTGMSGSEFLDYVSMGLDKLQQLVYNVKSEVN*