Scaffold Ga0065726_14625

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_14625
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16260
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046378	Metagenome	151	Y
F091916	Metagenome / Metatranscriptome	107	Y
F100404	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1462511	F100404	AGGA	MSEEIVNEEETSFTSTAEFDKVYQHLISKIPVNDHRAASSVIYGHYRDWGVQKTCKYYGISIEEYKHYSEIFNFKQRMVKEMAGRKSKQDNIVNFLKVNVGQVVTPVQVATGTEVSLPTFYNFYNANRSYFKKVKRGHFEIVNPEVERANS*
Ga0065726_146257	F046378	GAGG	MILGGIKKDFPYPEKLCPYCNWKLVPVNAIHWGEDVYQYKALYLDKNPDCPAYDEGALQAYARIYYTSEDAFFYFKDIQMPVQRWTKEELYSIYQ*
Ga0065726_146259	F091916	AGGAG	MKDNMKKMVSDHNAMKSWHETAAKSAAEQMQDHIKAASWHDSQVNIIKGMINEVPLDPEKKVSGVPTGGSASAPTSGSGKTSPTKEIPLDPKTVKKGDLVEILSQHEEQFGKFDMSVEDIASFLLAE*