Scaffold Ga0065726_13938

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_13938
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18168
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (35.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002197	Metagenome / Metatranscriptome	584	Y
F025996	Metagenome	199	Y
F031080	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1393825	F025996	N/A	MKRTFQQEMLIGELDKSIIALSKRKLNILKELDSINQNISFLRVQQEELIEHYGH*
Ga0065726_139383	F002197	N/A	MYTLKILAPLVLTMCAEGLTTGQGDYCVLDKSSSNVVKYYEPGKSCYVNGIFYRKCEERN
Ga0065726_1393840	F031080	GGA	MFDELWSEIQDAPGEIFDIPEMQELDEDKKFNVTEYLNSNYDY*