Scaffold Ga0065726_13313

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_13313
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20344
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044280	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_133138	F044280	GAG	VFLNSKTRNTFAPLDGTAAFVTKYFSGTDEDGAALLKPPFLARAILYPSKLVPQLSESLKCNAKENMKMTHKMEGVGGNNNCPSYFPDFGSFTTRKEIIRTHKRLVKTFGEDSRTVYVVYIGSVLLTYSAVFAFFSGTCGRVGVYAIALIALGALTNSGKRDGAVPLPGLFVISALTFTSMIFGRNMKRRRSKKQKTK*