Scaffold Ga0065726_12705

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_12705
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23487
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032672	Metagenome / Metatranscriptome	179	N
F065805	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_127051	F032672	AGGCGG	MPNVVISNFINDKWVDRIYMAFNETPYLLKPDGTIENCKIKKVKSNKKSYFLTSTGKWFNNSGLRIDEPAGIDINAERSKFQAELKQADIDAKFIKLKQTIRGY*
Ga0065726_127054	F065805	N/A	MTDKEQIQHLIDKNNKLEAELIALKNKSKGWLEDLQNTKVILMARNIDLKTRKEIHVNWELKKKIILFLQKTQSLEAYDALTPNQIAHKAATFIEKILGSKHPPLLAITNELQVTTREPD