Scaffold Ga0065726_11831

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_11831
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29682
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (74.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007583	Metagenome / Metatranscriptome	348	Y
F009209	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1183129	F007583	AGGAG	MENNTSSASAPQQNGMANLRFGVYNQPTNISGKTVEQARTQFSKIWGIPTDAVAYKGKDKLDENYIIQPGDNVEFHRRAGEKG*
Ga0065726_1183131	F009209	AGGA	VVSEQIDFSNVDEVLHSIEADREDRNLTPSNSLTDSKKYDQDLYKKWFRSKTQSGFVSIKPWYQGLKLKIDIGKTSSDGKLLGSTMVFVDAIDFAAYLDSVINGTAKTNFPINEKNGSPTNESFVSYGGGIIDSKPISRIFKSHYWQNSDKSYDEKAFVWKCGHFTARKTDSGAFIPNMSSPVSVDSIKVTRQDIVSIAFILKLSLTSHVTNNPDWYNI*