Scaffold Ga0065726_11309

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_11309
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36111
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (80.70%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F012451	Metagenome / Metatranscriptome	280	Y
F012663	Metagenome / Metatranscriptome	278	Y
F035228	Metagenome / Metatranscriptome	172	Y
F040602	Metagenome / Metatranscriptome	161	Y
F041738	Metagenome / Metatranscriptome	159	Y
F071029	Metagenome / Metatranscriptome	122	N
F088810	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1130919	F035228	AGGCGG	VSKNQSDYDIPARKFDFHTDLKFGKKGEKLVEEFLDAMSDGAFEVKTDRYRNGRMVLEMTHNPRKKVDEEGKPLWKPSGLAITKAKWWVYVYTLDGSFVIVSTDRIKRYLKVNKERFNPKKYHGFAMASSNPSKGYLLQPEDVMDLMINTAYDEVRTD*
Ga0065726_1130929	F088810	AGGA	MATLNIPNNFTNGTPAVATEVNANFQAVKTFTEGIAAGTELDDGSIVYSKLAAATVSALTTAGDNAQVVLGVQIFG*
Ga0065726_1130931	F012451	GGGGG	MAYTEMTASALRQVVRDITDLDATDLPDSLLNLYLRDGYYRILDIEKRWNFLEKSFTFNTVAEQRAYEIDTFTADPMAQIVSIVDNTGVGLRLDMVAHDEAENTYIGSYDTSGDPLFYSIWEGKIHLFPKPNNVRTLTVRGYREPVDWVTTGGFVDASANLHFALAYYACSRVYQRLEDVAMADAYKRSFDEGVMLAVKSIMTPNSHAHLVLSAGRTTGRPTFNGWMQNLGKTLGQ*
Ga0065726_1130941	F001396	GGA	MLSSVWVPIIVAIIMGPVVVVLQRLRKENTEQHNQGQILLRVIGTKVDKIGSKLDNHIGWHEGQKETK*
Ga0065726_1130942	F012663	N/A	MIFKCSNCDKAFAADELPRRGEVCFACHIKTVRLGFTYGQEDFHGPTIAERQRQTVEQAKINGYNAEPVTNWM*
Ga0065726_1130946	F041738	N/A	MEKIKAFIYNNPVRVAAFVSSTVALVVAFVVPEAPVEPAVAFVLSALGLGEFAQRAENKKTDEALFSEIPSEDDLV*
Ga0065726_1130951	F040602	GAG	MTTTNDAMYTALRALYPSAGTTLGDLLHAHWSAVGLQYRGSLQFEYYVAQGAAGTTWGDLANNFWSDPDFVVSNLELESGNDLLLEDGSFMLLEVGNG*
Ga0065726_1130952	F071029	N/A	MDNILDPRQEKFLNWLMVPPPHRDPSSQEKYAIMEGVDETTLRRWKKKPAFKMEWEKRVSEQQQSPERTQKLLDNLYQRALEGDNNSAKLYLQATNRLAPTQVQVEHSTKPSEISDAELDSLIASVAQSEIESRRELKEH*