Scaffold Ga0066232_105607

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066232_105607

Scaffold Ga0066232_105607

Overview

Basic Information
Taxon OID	3300004331 Open in IMG/M
Scaffold ID	Ga0066232_105607 Open in IMG/M
Source Dataset Name	Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC2C
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Source Dataset Sampling Location
Location Name	Sao Paulo State, Brazil
Coordinates	Lat. (^o)	-23.8553	Long. (^o)	-46.1394	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011154	Metagenome / Metatranscriptome	294	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066232_1056071	F011154	N/A	VRACLTRMRNLAARSDKKPFRTESSNSSWFRTVNRSYPEGIRLLLCVSTDGRLWRSPRGGQPNERRRKAGQRERTNREGHAVSAGPVKTFQTAGDVKNGTAGLRTKSNLRVKRRDPWPGANVPSRAEADPELSGQDAEKKSQSCLDLVCEPVAQPPAQASKASLEIQTPQGAGRPCYEAADSACRG

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