NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065202_1187771

Scaffold Ga0065202_1187771


Overview

Basic Information
Taxon OID3300004318 Open in IMG/M
Scaffold IDGa0065202_1187771 Open in IMG/M
Source Dataset NameMarine microbial communities from Galveston Bay (MSEDA13C- fraction 7)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1076
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameGalveston Bay, USA
CoordinatesLat. (o)29.5Long. (o)-94.76Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009657Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0065202_11877711F009657AGAAGLIGIKEYEILYDTGEATKLVAQVNRMAKEGWQAKSIGALGAPTGIRAVYVLMELEVG*

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