Scaffold Ga0066599_100031440

Overview

Basic Information

• Taxon OID: 3300004282
• Scaffold ID: Ga0066599_100031440
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1957
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9232
  • Long. (^o): -3.1878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000706	Metagenome / Metatranscriptome	926	Y
F002934	Metagenome / Metatranscriptome	519	Y
F025974	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066599_1000314403	F025974	GGAG	MPNPTRIEIDCSTGIESIIELTDAEVAELTYQAELAAEKKAEQDAADAAKAEAKAALLNRLGITADEAALLLA*
Ga0066599_1000314405	F002934	AGGAG	MNMKNPYVMSLGAFLAVWGTTSNFALDYRSILGAIVAGVFGYASPSK*
Ga0066599_1000314406	F000706	GAG	MTQQDFFTLYFASLGIIGGLAGYVITHLLSEIKRLNTRVDEIYNILLDR*